IL_9MTP_300

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

9MTP|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_300 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.0983

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9MTP|1|2a|G|409
9MTP|1|2a|G|410
9MTP|1|2a|A|411
9MTP|1|2a|A|412
9MTP|1|2a|G|413
9MTP|1|2a|A|414
9MTP|1|2a|A|415
9MTP|1|2a|G|416
*
9MTP|1|2a|U|427
9MTP|1|2a|G|428
9MTP|1|2a|U|429
9MTP|1|2a|A|430
9MTP|1|2a|A|431
9MTP|1|2a|A|432
9MTP|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4