3D structure

PDB id
9MTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
9MTP|1|2a|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTP_324 not in the Motif Atlas
Geometric match to IL_4LFB_044
Geometric discrepancy: 0.1363
The information below is about IL_4LFB_044
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_76319.5
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

9MTP|1|2a|U|1052
9MTP|1|2a|G|1053
9MTP|1|2a|C|1054
9MTP|1|2a|A|1055
9MTP|1|2a|U|1056
*
9MTP|1|2a|A|1204
9MTP|1|2a|U|1205
9MTP|1|2a|G|1206

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2c
30S ribosomal protein S3
Chain 2j
30S ribosomal protein S10
Chain 2n
30S ribosomal protein S14 type Z
Chain 2v
CYS-Stop mRNA
Chain 2w
Peptide chain release factor 1

Coloring options:


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