3D structure

PDB id
9MTQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GAAC*GAGUGAAAUAGAGC
Length
18 nucleotides
Bulged bases
9MTQ|1|1A|U|504, 9MTQ|1|1A|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTQ_012 not in the Motif Atlas
Geometric match to IL_9DFE_012
Geometric discrepancy: 0.0396
The information below is about IL_9DFE_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_44923.1
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
9

Unit IDs

9MTQ|1|1A|G|481
9MTQ|1|1A|A|482
9MTQ|1|1A|A|483
9MTQ|1|1A|C|484
*
9MTQ|1|1A|G|496
9MTQ|1|1A|A|497
9MTQ|1|1A|G|498
9MTQ|1|1A|U|499
9MTQ|1|1A|G|500
9MTQ|1|1A|A|501
9MTQ|1|1A|A|502
9MTQ|1|1A|A|503
9MTQ|1|1A|U|504
9MTQ|1|1A|A|505
9MTQ|1|1A|G|506
9MTQ|1|1A|A|507
9MTQ|1|1A|G|508
9MTQ|1|1A|C|509

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1W
50S ribosomal protein L22
Chain 1Y
50S ribosomal protein L24

Coloring options:


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