IL_9MTQ_019

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_019 not in the Motif Atlas

Geometric match to IL_9DFE_019

Geometric discrepancy: 0.0531

The information below is about IL_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9MTQ|1|1A|U|703
9MTQ|1|1A|G|704
9MTQ|1|1A|A|705
9MTQ|1|1A|A|706
9MTQ|1|1A|G|707
*
9MTQ|1|1A|U|724
9MTQ|1|1A|G|725
9MTQ|1|1A|G|726
9MTQ|1|1A|A|727
9MTQ|1|1A|G|728

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2