IL_9MTQ_061

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

9MTQ|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_061 not in the Motif Atlas

Geometric match to IL_9DFE_062

Geometric discrepancy: 0.0609

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9MTQ|1|1A|G|1526
9MTQ|1|1A|G|1527
9MTQ|1|1A|A|1528
9MTQ|1|1A|A|1528|||A
9MTQ|1|1A|G|1529
*
9MTQ|1|1A|U|1540
9MTQ|1|1A|G|1541
9MTQ|1|1A|A|1542
9MTQ|1|1A|C|1543
9MTQ|1|1A|A|1544
9MTQ|1|1A|A|1545
9MTQ|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains