IL_9MTQ_207

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

9MTQ|1|2A|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_207 not in the Motif Atlas

Geometric match to IL_9DFE_034

Geometric discrepancy: 0.0768

The information below is about IL_9DFE_034

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9MTQ|1|2A|C|994
9MTQ|1|2A|C|995
9MTQ|1|2A|A|996
*
9MTQ|1|2A|U|1159
9MTQ|1|2A|G|1160

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21