IL_9MTQ_276

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

9MTQ|1|2A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_276 not in the Motif Atlas

Geometric match to IL_9DFE_106

Geometric discrepancy: 0.0536

The information below is about IL_9DFE_106

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9MTQ|1|2A|G|2737
9MTQ|1|2A|A|2738
9MTQ|1|2A|U|2739
9MTQ|1|2A|A|2740
9MTQ|1|2A|A|2741
9MTQ|1|2A|C|2742
*
9MTQ|1|2A|G|2762
9MTQ|1|2A|G|2763
9MTQ|1|2A|A|2764
9MTQ|1|2A|A|2765
9MTQ|1|2A|G|2766
9MTQ|1|2A|C|2767

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13