IL_9MTQ_301

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

9MTQ|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_301 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.1043

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9MTQ|1|2a|G|409
9MTQ|1|2a|G|410
9MTQ|1|2a|A|411
9MTQ|1|2a|A|412
9MTQ|1|2a|G|413
9MTQ|1|2a|A|414
9MTQ|1|2a|A|415
9MTQ|1|2a|G|416
*
9MTQ|1|2a|U|427
9MTQ|1|2a|G|428
9MTQ|1|2a|U|429
9MTQ|1|2a|A|430
9MTQ|1|2a|A|431
9MTQ|1|2a|A|432
9MTQ|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4