IL_9MTR_186

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

9MTR|1|2A|U|504, 9MTR|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTR_186 not in the Motif Atlas

Geometric match to IL_9DFE_012

Geometric discrepancy: 0.0527

The information below is about IL_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

9MTR|1|2A|G|481
9MTR|1|2A|A|482
9MTR|1|2A|A|483
9MTR|1|2A|C|484
*
9MTR|1|2A|G|496
9MTR|1|2A|A|497
9MTR|1|2A|G|498
9MTR|1|2A|U|499
9MTR|1|2A|G|500
9MTR|1|2A|A|501
9MTR|1|2A|A|502
9MTR|1|2A|A|503
9MTR|1|2A|U|504
9MTR|1|2A|A|505
9MTR|1|2A|G|506
9MTR|1|2A|A|507
9MTR|1|2A|G|508
9MTR|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24