IL_9MTR_273

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTR_273 not in the Motif Atlas

Geometric match to IL_9DFE_102

Geometric discrepancy: 0.0821

The information below is about IL_9DFE_102

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9MTR|1|2A|C|2652
9MTR|1|2A|U|2653
9MTR|1|2A|A|2654
9MTR|1|2A|G|2655
9MTR|1|2A|U|2656
9MTR|1|2A|A|2657
9MTR|1|2A|C|2658
*
9MTR|1|2A|G|2663
9MTR|1|2A|G|2664
9MTR|1|2A|A|2665
9MTR|1|2A|C|2666
9MTR|1|2A|C|2667
9MTR|1|2A|G|2668

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6