IL_9MTS_078

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

9MTS|1|1A|C|2055, 9MTS|1|1A|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTS_078 not in the Motif Atlas

Geometric match to IL_9DFE_079

Geometric discrepancy: 0.0818

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9MTS|1|1A|A|2054
9MTS|1|1A|C|2055
9MTS|1|1A|G|2056
9MTS|1|1A|A|2057
*
9MTS|1|1A|U|2611
9MTS|1|1A|C|2612
9MTS|1|1A|U|2613
9MTS|1|1A|A|2614
9MTS|1|1A|U|2615

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1W

50S ribosomal protein L22

Chain 1z

P-site Peptidyl-tRNA fMEAAAKC-tRNAcys Peptide-part