IL_9MTS_093

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

9MTS|1|1A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTS_093 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.101

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

9MTS|1|1A|A|2459
9MTS|1|1A|U|2460
9MTS|1|1A|C|2461
*
9MTS|1|1A|G|2489
9MTS|1|1A|G|2490
9MTS|1|1A|U|2491
9MTS|1|1A|U|2492
9MTS|1|1A|U|2493

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1w

Peptide chain release factor 1