3D structure

PDB id
9MTS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTS_160 not in the Motif Atlas
Geometric match to IL_5J7L_053
Geometric discrepancy: 0.1355
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

9MTS|1|1a|C|1158
9MTS|1|1a|U|1159
9MTS|1|1a|G|1160
9MTS|1|1a|C|1161
*
9MTS|1|1a|G|1175
9MTS|1|1a|A|1176
9MTS|1|1a|G|1177
9MTS|1|1a|G|1178
9MTS|1|1a|A|1179
9MTS|1|1a|A|1180
9MTS|1|1a|G|1181

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1b
30S ribosomal protein S2
Chain 1i
30S ribosomal protein S9

Coloring options:


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