3D structure

PDB id
9MTS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
9MTS|1|2A|U|1026, 9MTS|1|2A|A|1127, 9MTS|1|2A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTS_213 not in the Motif Atlas
Geometric match to IL_9DFE_039
Geometric discrepancy: 0.0812
The information below is about IL_9DFE_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

9MTS|1|2A|G|1024
9MTS|1|2A|G|1025
9MTS|1|2A|U|1026
9MTS|1|2A|A|1027
9MTS|1|2A|A|1028
9MTS|1|2A|A|1029
9MTS|1|2A|G|1030
*
9MTS|1|2A|C|1124
9MTS|1|2A|G|1125
9MTS|1|2A|A|1126
9MTS|1|2A|A|1127
9MTS|1|2A|A|1128
9MTS|1|2A|A|1129
9MTS|1|2A|U|1130
9MTS|1|2A|G|1131
9MTS|1|2A|A|1132
9MTS|1|2A|U|1133
9MTS|1|2A|C|1135
9MTS|1|2A|G|1136
9MTS|1|2A|G|1137
9MTS|1|2A|G|1138
9MTS|1|2A|G|1139
9MTS|1|2A|C|1140

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 29
50S ribosomal protein L36
Chain 2B
5S ribosomal RNA; 5S rRNA
Chain 2E
50S ribosomal protein L3
Chain 2N
50S ribosomal protein L13
Chain 2Q
50S ribosomal protein L16

Coloring options:


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