IL_9MTS_221

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

9MTS|1|2A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTS_221 not in the Motif Atlas

Geometric match to IL_9DFE_050

Geometric discrepancy: 0.0826

The information below is about IL_9DFE_050

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9MTS|1|2A|G|1319
9MTS|1|2A|C|1320
9MTS|1|2A|A|1321
9MTS|1|2A|A|1322
9MTS|1|2A|U|1323
*
9MTS|1|2A|A|1331
9MTS|1|2A|G|1332
9MTS|1|2A|C|1333

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2X

50S ribosomal protein L23