IL_9MTS_302

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

9MTS|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTS_302 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.1014

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9MTS|1|2a|G|409
9MTS|1|2a|G|410
9MTS|1|2a|A|411
9MTS|1|2a|A|412
9MTS|1|2a|G|413
9MTS|1|2a|A|414
9MTS|1|2a|A|415
9MTS|1|2a|G|416
*
9MTS|1|2a|U|427
9MTS|1|2a|G|428
9MTS|1|2a|U|429
9MTS|1|2a|A|430
9MTS|1|2a|A|431
9MTS|1|2a|A|432
9MTS|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4