IL_9MTT_069

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

9MTT|1|1A|G|1801, 9MTT|1|1A|G|1816, 9MTT|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTT_069 not in the Motif Atlas

Geometric match to IL_9DFE_070

Geometric discrepancy: 0.0531

The information below is about IL_9DFE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9MTT|1|1A|U|1798
9MTT|1|1A|G|1799
9MTT|1|1A|C|1800
9MTT|1|1A|G|1801
9MTT|1|1A|A|1802
9MTT|1|1A|A|1803
9MTT|1|1A|C|1804
*
9MTT|1|1A|G|1813
9MTT|1|1A|G|1814
9MTT|1|1A|A|1815
9MTT|1|1A|G|1816
9MTT|1|1A|G|1817
9MTT|1|1A|U|1818
9MTT|1|1A|A|1819
9MTT|1|1A|U|1820
9MTT|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA