3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UGA*UA
Length
5 nucleotides
Bulged bases
9N2B|1|16|G|31
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_001 not in the Motif Atlas
Homologous match to IL_5J7L_001
Geometric discrepancy: 0.1173
The information below is about IL_5J7L_001
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

9N2B|1|16|U|30
9N2B|1|16|G|31
9N2B|1|16|A|32
*
9N2B|1|16|U|552
9N2B|1|16|A|553

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SD
30S ribosomal protein S4
Chain SL
Small ribosomal subunit protein uS12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1651 s