IL_9N2B_003

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

9N2B|1|16|C|48, 9N2B|1|16|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_003 not in the Motif Atlas

Geometric match to IL_5J7L_003

Geometric discrepancy: 0.0684

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9N2B|1|16|C|47
9N2B|1|16|C|48
9N2B|1|16|U|49
9N2B|1|16|A|50
9N2B|1|16|A|51
9N2B|1|16|C|52
*
9N2B|1|16|G|359
9N2B|1|16|G|360
9N2B|1|16|G|361

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SL

Small ribosomal subunit protein uS12