3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
9N2B|1|16|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_022 not in the Motif Atlas
Homologous match to IL_5J7L_022
Geometric discrepancy: 0.1919
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

9N2B|1|16|G|446
9N2B|1|16|G|447
9N2B|1|16|A|448
9N2B|1|16|G|449
9N2B|1|16|G|450
*
9N2B|1|16|C|483
9N2B|1|16|G|484
9N2B|1|16|U|485
9N2B|1|16|U|486
9N2B|1|16|A|487
9N2B|1|16|C|488

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SD
30S ribosomal protein S4
Chain SP
30S ribosomal protein S16

Coloring options:


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