IL_9N2B_024

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_024 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0551

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

9N2B|1|16|C|504
9N2B|1|16|G|505
9N2B|1|16|G|506
9N2B|1|16|C|507
9N2B|1|16|U|508
9N2B|1|16|A|509
9N2B|1|16|A|510
9N2B|1|16|C|511
*
9N2B|1|16|G|540
9N2B|1|16|G|541

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SD

30S ribosomal protein S4

Chain SL

Small ribosomal subunit protein uS12