IL_9N2B_027

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGCAG*UCAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_027 not in the Motif Atlas

Homologous match to IL_5J7L_027

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_027

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9N2B|1|16|C|580
9N2B|1|16|G|581
9N2B|1|16|C|582
9N2B|1|16|A|583
9N2B|1|16|G|584
*
9N2B|1|16|U|757
9N2B|1|16|C|758
9N2B|1|16|A|759
9N2B|1|16|G|760
9N2B|1|16|G|761

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SH

30S ribosomal protein S8

Chain SL

Small ribosomal subunit protein uS12

Chain SO

30S ribosomal protein S15

Chain SQ

30S ribosomal protein S17