IL_9N2B_037

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_037 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.071

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9N2B|1|16|C|779
9N2B|1|16|A|780
9N2B|1|16|A|781
9N2B|1|16|A|782
9N2B|1|16|C|783
*
9N2B|1|16|G|799
9N2B|1|16|G|800
9N2B|1|16|U|801
9N2B|1|16|A|802
9N2B|1|16|G|803

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain SK

Small ribosomal subunit protein uS11

Chain SU

30S ribosomal protein S21