IL_9N2B_046
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 9N2B|1|16|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2B_046 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1539
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9N2B|1|16|U|1052
9N2B|1|16|G|1053
9N2B|1|16|C|1054
9N2B|1|16|A|1055
9N2B|1|16|U|1056
*
9N2B|1|16|A|1204
9N2B|1|16|U|1205
9N2B|1|16|G|1206
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain SC
- 30S ribosomal protein S3
- Chain SJ
- 30S ribosomal protein S10
- Chain SN
- 30S ribosomal protein S14
- Chain mR
- Synthetic messenger RNA (mRNA) 60 bp in length
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