IL_9N2B_055
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGACC*GCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2B_055 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.0938
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
9N2B|1|16|C|1259
9N2B|1|16|G|1260
9N2B|1|16|A|1261
9N2B|1|16|C|1262
9N2B|1|16|C|1263
*
9N2B|1|16|G|1272
9N2B|1|16|C|1273
9N2B|1|16|A|1274
9N2B|1|16|A|1275
9N2B|1|16|G|1276
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain SN
- 30S ribosomal protein S14
- Chain SS
- Small ribosomal subunit protein uS19
Coloring options: