IL_9N2B_058

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_058 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0755

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9N2B|1|16|G|1401
9N2B|1|16|4OC|1402
9N2B|1|16|C|1403
9N2B|1|16|C|1404
*
9N2B|1|16|G|1497
9N2B|1|16|UR3|1498
9N2B|1|16|A|1499
9N2B|1|16|A|1500
9N2B|1|16|C|1501

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain Pt

Transfer RNA; tRNA

Chain mR

Synthetic messenger RNA (mRNA) 60 bp in length