3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
(5MC)AC*GAAG
Length
7 nucleotides
Bulged bases
9N2B|1|16|A|1493
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9N2B|1|16|5MC|1407
9N2B|1|16|A|1408
9N2B|1|16|C|1409
*
9N2B|1|16|G|1491
9N2B|1|16|A|1492
9N2B|1|16|A|1493
9N2B|1|16|G|1494

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 23
Large subunit ribosomal RNA; LSU rRNA
Chain SL
Small ribosomal subunit protein uS12
Chain mR
Synthetic messenger RNA (mRNA) 60 bp in length

Coloring options:

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