IL_9N2B_067

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_067 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.0606

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9N2B|1|23|G|24
9N2B|1|23|U|25
9N2B|1|23|G|26
9N2B|1|23|G|27
9N2B|1|23|A|28
9N2B|1|23|U|29
9N2B|1|23|G|30
*
9N2B|1|23|C|510
9N2B|1|23|U|511
9N2B|1|23|G|512
9N2B|1|23|A|513
9N2B|1|23|A|514
9N2B|1|23|A|515
9N2B|1|23|C|516

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LT

50S ribosomal protein L20

Chain LV

Large ribosomal subunit protein uL22

Chain Lf

50S ribosomal protein L32