IL_9N2B_072
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2B_072 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.0577
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9N2B|1|23|G|188
9N2B|1|23|G|189
9N2B|1|23|A|190
9N2B|1|23|A|191
9N2B|1|23|C|192
9N2B|1|23|U|193
9N2B|1|23|G|194
*
9N2B|1|23|C|201
9N2B|1|23|U|202
9N2B|1|23|A|203
9N2B|1|23|A|204
9N2B|1|23|G|205
9N2B|1|23|U|206
9N2B|1|23|A|207
9N2B|1|23|C|208
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LO
- 50S ribosomal protein L15
- Chain Lb
- 50S ribosomal protein L28
- Chain Li
- 50S ribosomal protein L35
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