3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_072 not in the Motif Atlas
Homologous match to IL_5J7L_250
Geometric discrepancy: 0.0577
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

9N2B|1|23|G|188
9N2B|1|23|G|189
9N2B|1|23|A|190
9N2B|1|23|A|191
9N2B|1|23|C|192
9N2B|1|23|U|193
9N2B|1|23|G|194
*
9N2B|1|23|C|201
9N2B|1|23|U|202
9N2B|1|23|A|203
9N2B|1|23|A|204
9N2B|1|23|G|205
9N2B|1|23|U|206
9N2B|1|23|A|207
9N2B|1|23|C|208

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LO
50S ribosomal protein L15
Chain Lb
50S ribosomal protein L28
Chain Li
50S ribosomal protein L35

Coloring options:


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