IL_9N2B_074

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_074 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.1356

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

9N2B|1|23|C|269
9N2B|1|23|A|270
9N2B|1|23|G|271
*
9N2B|1|23|C|366
9N2B|1|23|G|367
9N2B|1|23|A|368
9N2B|1|23|U|369
9N2B|1|23|G|370

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains