3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
9N2B|1|23|A|504, 9N2B|1|23|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_077 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.058
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

9N2B|1|23|G|481
9N2B|1|23|A|482
9N2B|1|23|A|483
9N2B|1|23|C|484
*
9N2B|1|23|G|496
9N2B|1|23|A|497
9N2B|1|23|G|498
9N2B|1|23|U|499
9N2B|1|23|G|500
9N2B|1|23|A|501
9N2B|1|23|A|502
9N2B|1|23|A|503
9N2B|1|23|A|504
9N2B|1|23|A|505
9N2B|1|23|G|506
9N2B|1|23|A|507
9N2B|1|23|A|508
9N2B|1|23|C|509

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LV
Large ribosomal subunit protein uL22
Chain LX
50S ribosomal protein L24

Coloring options:


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