3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CGAGG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_113 not in the Motif Atlas
Homologous match to IL_5J7L_293
Geometric discrepancy: 0.0674
The information below is about IL_5J7L_293
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

9N2B|1|23|C|1357
9N2B|1|23|G|1358
9N2B|1|23|A|1359
9N2B|1|23|G|1360
9N2B|1|23|G|1361
*
9N2B|1|23|C|1370
9N2B|1|23|G|1371
9N2B|1|23|U|1372
9N2B|1|23|A|1373
9N2B|1|23|G|1374

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LB
50S ribosomal protein L2
Chain Lb
50S ribosomal protein L28
Chain Lh
50S ribosomal protein L34

Coloring options:


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