IL_9N2B_130

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9N2B|1|23|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_130 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.124

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9N2B|1|23|U|1712
9N2B|1|23|A|1713
9N2B|1|23|U|1714
9N2B|1|23|G|1715
9N2B|1|23|U|1716
9N2B|1|23|A|1717
9N2B|1|23|G|1718
*
9N2B|1|23|U|1742
9N2B|1|23|G|1743
9N2B|1|23|A|1744
9N2B|1|23|A|1745
9N2B|1|23|A|1746

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains