IL_9N2B_139

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_139 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1116

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9N2B|1|23|U|1864
9N2B|1|23|U|1865
9N2B|1|23|A|1866
9N2B|1|23|G|1867
*
9N2B|1|23|C|1874
9N2B|1|23|G|1875
9N2B|1|23|A|1876
9N2B|1|23|A|1877
9N2B|1|23|G|1878

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains