3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
9N2B|1|23|U|2491
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_155 not in the Motif Atlas
Homologous match to IL_5J7L_337
Geometric discrepancy: 0.0781
The information below is about IL_5J7L_337
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_51387.3
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
21

Unit IDs

9N2B|1|23|A|2459
9N2B|1|23|U|2460
9N2B|1|23|A|2461
*
9N2B|1|23|U|2489
9N2B|1|23|G|2490
9N2B|1|23|U|2491
9N2B|1|23|U|2492
9N2B|1|23|U|2493

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LP
50S ribosomal protein L16
Chain La
50S ribosomal protein L27

Coloring options:


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