3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_156 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.1065
The information below is about IL_5J7L_338
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

9N2B|1|23|C|2466
9N2B|1|23|C|2467
9N2B|1|23|A|2468
9N2B|1|23|A|2469
9N2B|1|23|G|2470
*
9N2B|1|23|C|2480
9N2B|1|23|G|2481
9N2B|1|23|A|2482
9N2B|1|23|C|2483
9N2B|1|23|G|2484

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LP
50S ribosomal protein L16
Chain Lj
50S ribosomal protein L36

Coloring options:


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