IL_9N2B_172

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_172 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0626

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

9N2B|1|23|U|2847
9N2B|1|23|G|2848
9N2B|1|23|U|2849
9N2B|1|23|A|2850
9N2B|1|23|A|2851
9N2B|1|23|G|2852
*
9N2B|1|23|U|2865
9N2B|1|23|U|2866
9N2B|1|23|G|2867
9N2B|1|23|A|2868
9N2B|1|23|G|2869

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LQ

50S ribosomal protein L17

Chain LS

50S ribosomal protein L19