IL_9N2C_016

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_016 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1363

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9N2C|1|16|G|292
9N2C|1|16|G|293
*
9N2C|1|16|U|304
9N2C|1|16|G|305
9N2C|1|16|A|306
9N2C|1|16|C|307
9N2C|1|16|C|308

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SL

Small ribosomal subunit protein uS12

Chain SP

30S ribosomal protein S16