IL_9N2C_020

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0578

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9N2C|1|16|U|409
9N2C|1|16|G|410
9N2C|1|16|A|411
9N2C|1|16|A|412
9N2C|1|16|G|413
9N2C|1|16|A|414
9N2C|1|16|A|415
9N2C|1|16|G|416
*
9N2C|1|16|U|427
9N2C|1|16|G|428
9N2C|1|16|U|429
9N2C|1|16|A|430
9N2C|1|16|A|431
9N2C|1|16|A|432
9N2C|1|16|G|433

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SD

30S ribosomal protein S4