IL_9N2C_061

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

9N2C|1|16|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N2C|1|16|5MC|1407
9N2C|1|16|A|1408
9N2C|1|16|C|1409
*
9N2C|1|16|G|1491
9N2C|1|16|A|1492
9N2C|1|16|A|1493
9N2C|1|16|G|1494

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain SL

Small ribosomal subunit protein uS12