IL_9N2C_076

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_076 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3357

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9N2C|1|23|C|274
9N2C|1|23|C|275
9N2C|1|23|U|276
9N2C|1|23|G|277
9N2C|1|23|A|278
9N2C|1|23|A|279
9N2C|1|23|U|280
9N2C|1|23|C|281
*
9N2C|1|23|G|359
9N2C|1|23|U|360
9N2C|1|23|G|361
9N2C|1|23|A|362
9N2C|1|23|G|363

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains