IL_9N2C_090

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9N2C|1|23|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_090 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1083

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9N2C|1|23|A|844
9N2C|1|23|A|845
9N2C|1|23|U|846
9N2C|1|23|U|847
9N2C|1|23|C|848
*
9N2C|1|23|G|930
9N2C|1|23|U|931
9N2C|1|23|U|932
9N2C|1|23|A|933
9N2C|1|23|U|934

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain Ld

Large ribosomal subunit protein uL30