IL_9N2C_175

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

9N2C|1|5|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2C_175 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.2571

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9N2C|1|5|C|17
9N2C|1|5|G|18
*
9N2C|1|5|U|65
9N2C|1|5|A|66
9N2C|1|5|G|67

Current chains

Chain 5

5S large subunit ribosomal RNA of the H operon

Nearby chains