IL_9N6V_027

3D structure

PDB id

9N6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GGU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6V_027 not in the Motif Atlas

Geometric match to IL_8GLP_173

Geometric discrepancy: 0.1129

The information below is about IL_8GLP_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9N6V|1|L0|G|505
9N6V|1|L0|G|506
9N6V|1|L0|U|507
*
9N6V|1|L0|A|529
9N6V|1|L0|A|530
9N6V|1|L0|C|531

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LP

U3 small nucleolar RNA-associated protein 6

Chain SA

Nucleolar protein 56

Chain SS

U3 small nucleolar RNA-associated protein 14