IL_9N6W_008

3D structure

PDB id

9N6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AUUG*UUU

Length

7 nucleotides

Bulged bases

9N6W|1|L0|U|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6W_008 not in the Motif Atlas

Geometric match to IL_2O3V_004

Geometric discrepancy: 0.2066

The information below is about IL_2O3V_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9N6W|1|L0|A|175
9N6W|1|L0|U|176
9N6W|1|L0|U|177
9N6W|1|L0|G|178
*
9N6W|1|L0|U|219
9N6W|1|L0|U|220
9N6W|1|L0|U|221

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LN

U3 small nucleolar RNA-associated protein 4

Chain ND

Bud site selection protein 21