IL_9N6W_010
3D structure
- PDB id
- 9N6W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU processome maturation and disassembly, State A*
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GUC*GC
- Length
- 5 nucleotides
- Bulged bases
- 9N6W|1|L0|U|239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N6W_010 not in the Motif Atlas
- Geometric match to IL_6JDV_003
- Geometric discrepancy: 0.3948
- The information below is about IL_6JDV_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
9N6W|1|L0|G|238
9N6W|1|L0|U|239
9N6W|1|L0|C|240
*
9N6W|1|L0|G|273
9N6W|1|L0|C|274
Current chains
- Chain L0
- 5'ETS rRNA
Nearby chains
- Chain L2
- U3 small nucleolar RNA; U3 snoRNA
- Chain L5
- 40S ribosomal protein S5
- Chain LC
- 40S ribosomal protein S16-A
- Chain LJ
- U3 small nucleolar RNA-associated protein 15
- Chain LS
- U3 small nucleolar RNA-associated protein 18
- Chain SY
- U3 small nucleolar RNA-associated protein 11
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