IL_9N6W_026

3D structure

PDB id

9N6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGC*GAGAG

Length

8 nucleotides

Bulged bases

9N6W|1|L0|A|536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6W_026 not in the Motif Atlas

Geometric match to IL_8P9A_315

Geometric discrepancy: 0.2696

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

9N6W|1|L0|C|501
9N6W|1|L0|G|502
9N6W|1|L0|C|503
*
9N6W|1|L0|G|533
9N6W|1|L0|A|534
9N6W|1|L0|G|535
9N6W|1|L0|A|536
9N6W|1|L0|G|537

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LP

U3 small nucleolar RNA-associated protein 6

Chain SA

Nucleolar protein 56

Chain SS

U3 small nucleolar RNA-associated protein 14