IL_9N6W_074

3D structure

PDB id

9N6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9N6W|1|L1|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6W_074 not in the Motif Atlas

Geometric match to IL_9E6Q_002

Geometric discrepancy: 0.3819

The information below is about IL_9E6Q_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9N6W|1|L1|G|1268
9N6W|1|L1|U|1269
9N6W|1|L1|G|1270
*
9N6W|1|L1|C|1440
9N6W|1|L1|C|1441

Current chains

Chain L1

18S rRNA

Nearby chains

Chain SJ

Ribosomal RNA small subunit methyltransferase NEP1

Chain SZ

Essential nuclear protein 1