IL_9N6X_047

3D structure

PDB id

9N6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.71 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

9N6X|1|L1|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6X_047 not in the Motif Atlas

Homologous match to IL_9PN5_164

Geometric discrepancy: 0.2117

The information below is about IL_9PN5_164

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9N6X|1|L1|U|439
9N6X|1|L1|U|440
9N6X|1|L1|A|441
*
9N6X|1|L1|U|463
9N6X|1|L1|A|464

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4-A

Chain LF

40S ribosomal protein S24-A

Chain SI

Ribosome biogenesis protein BMS1