IL_9N77_014

3D structure

PDB id

9N77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State K

Experimental method

ELECTRON MICROSCOPY

Resolution

3.94 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

9N77|1|L1|A|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N77_014 not in the Motif Atlas

Homologous match to IL_9H3G_171

Geometric discrepancy: 0.0748

The information below is about IL_9H3G_171

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9N77|1|L1|A|265
9N77|1|L1|A|266
9N77|1|L1|U|267
*
9N77|1|L1|A|288
9N77|1|L1|U|289

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4-A

Chain L6

40S ribosomal protein S6-A